黄瓜抗黑星病相关基因的差异表达分析
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

基金项目:


Differential Expressed Analysis of Related Resistant Genes to Cladosporium cucumerinum in Cucumber
Author:
Affiliation:

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    以抗黑星病黄瓜材料HX1为试材,接种黑星病菌(Cladosporium cucumerinum)2h、8h、20h、32h和72h的叶片作为试验方(Tester),相应的未接种叶片作为对照方(Driver),利用SSH技术,构建了黑星病菌侵染初期的正向和反向cDNA-SSH文库。用巢式引物PCR检测插入片段,获得了200个阳性克隆,通过测序,除去重复序列,共得到105个Unique ESTs。与非冗余蛋白数据库进行BLASTx比对,结果显示,17条ESTs未找到同源序列,88条非重复序列和已知基因的同源性较高,占全部ESTs序列的83.8%,其中86条ESTs与非冗余蛋白数据库已知功能的蛋白具有高度的相似性。结合高密度点阵膜杂交差异筛选,阳性率为75.0%。经初步分析这些序列的功能,差异表达的ESTs功能涉及能量和基础代谢、信号转导、蛋白和核酸代谢、光合作用及逆境中特异表达的基因等方面。为研究黄瓜抗黑星病基因提供了依据。

    Abstract:

    A forward and reverse subtracted cDNA library of cucumber(Cucumis sativus L.) seedling leaves was constructed using suppression subtractive hybridization (SSH) method. The cucumber seedling leaves inoculated with Cladosporium cucumerinum on 2h、8h、20h、32h and72h were used as Tester, and that from untreated leave as Driver. Totally 200 SSH cDNA fragments were selected with Nested primer PCR. Through the DNA sequencing, we got 198 ESTs with high quality. After repeated and redundant sequences removed, 105 ESTs including 50 singletons and 55 contigs were obtained. Protein homology search in non-redundant (Nr) protein database revealed that 17 ESTs didn’t find homologous gene, 88 ESTs were highly homologous with known protein, accounting for 83.8% of all EST sequences, of which only 2 ESTs were unknown function protein. The positive rate of these ESTs was 75.0% detected by DIG Nonradioactive Nucleic Acid Labeling and Detection System. The function of these ESTs involved in energy and basic metabolism, signal transduction, protein and nucleic acid metabolism, photosynthesis and genes specifically induced under certain stress, etc. This study can provide a basis for further study of the cucumber genes resistance to Cladosporium cucumerinum.

    参考文献
    相似文献
    引证文献
引用本文

李全辉,沈镝.黄瓜抗黑星病相关基因的差异表达分析[J].植物遗传资源学报,2013,14(3):501-506.

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2012-08-03
  • 最后修改日期:2012-12-21
  • 录用日期:2013-03-11
  • 在线发布日期: 2013-04-02
  • 出版日期:
文章二维码
您是第位访问者
ICP:京ICP备09069690号-23
京ICP备09069690号-23
植物遗传资源学报 ® 2024 版权所有
技术支持:北京勤云科技发展有限公司