甘薯PAL基因家族的全基因组鉴定及生物信息学分析
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江西省农业科学院作物研究所

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国家现代农业产业技术体系项目(CARS-10-C8);江西省农作物良种联合攻关项目(9021109126);江西省农业科学院基础研究与人才培养专项(JXSNKYJCRC202422)


Genome-wide Identification and Bioinformatics Analysis of the PAL Gene Family in Sweet Potato (Ipomoea batatas L.)
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Crops Research Institute,Jiangxi Academy of Agricultural Sciences

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National Modern Agricultural Industry Technology System(CARS-10-C8); Jiangxi Joint Research Project on Crop Cultivar Breeding(9021109126)Basic Research and Talent Training Project of Jiangxi Academy of Agricultural Sciences (JXSNKYJCRC202422)

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    摘要:

    苯丙氨酸解氨酶(phenylalanin ammonia-lyase, PAL)是苯丙烷代谢途径中的关键酶和限速酶,在植物生长发育、抗逆等方面发挥重要作用。本研究在甘薯全基因组中筛选PAL基因家族成员,对甘薯PAL基因家族成员的理化性质、系统进化、保守结构域、染色体定位及基因表达进行了分析。结果表明:在甘薯全基因组中共鉴定出33个PAL成员,不均匀地分布于2、6、9和15号染色体上,PALs蛋白理化性质差异小,保守基序和基因结构相近。IbPALs启动子上存在多个逆境胁迫应答、激素响应和生长发育调控相关的顺式作用元件。甘薯IbPALs与拟南芥、三浅裂野牵牛和三裂叶薯PALs基因存在共线性关系。甘薯转录组数据显示,IbPALs基因在甘薯不同组织部位中存在表达,并且受到干旱胁迫的诱导表达。本研究为进一步探明甘薯PAL家族基因的功能提供了参考,为甘薯遗传改良奠定了基础。

    Abstract:

    Phenylalanin ammonia-lyase (PAL) is a key and rate-limiting enzyme in the phenylpropane metabolic pathway, which plays an important role in plant growth, development and stress tolerance. In this study, we screened PAL gene family members in the whole genome of sweet potato, and the physicochemical properties, phylogeny, conserved domains, chromosomal localization and gene expression of sweet potato PAL gene family members were analyzed. The results showed that a total of 33 IbPALs genes were identified in the whole genome of sweet potato, which were unevenly distributed on chromosomes 2, 6, 9 and 15. PALs proteins have small differences in physicochemical properties and similar conserved motifs and gene structures. Multiple cis-acting elements related to abiotic and biotic stress response, phytohormone responsive and growth and development regulation are present on the promoter of IbPALs. There were collinear relationships between sweet potato IbPALs and Arabidopsis thaliana, Ipomoea trifida and Ipomoea triloba PALs genes. The transcriptome data of sweet potato showed that IbPALs gene was expressed in different tissues of sweet potato and was induced by drought stress. This study provides a reference for further understanding the function of PAL family gene in sweet potato and lays a foundation for genetic improvement of sweet potato.

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  • 收稿日期:2024-06-26
  • 最后修改日期:2024-08-12
  • 录用日期:2024-11-22
  • 在线发布日期: 2025-01-07
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