山西师范大学生命科学学院,太原 030031
研究方向为水稻优良性状基因克隆和功能验证,E-mail: sxndpp@163.com;张晓林为共同第一作者
陈 惠,研究方向为植物抗逆分子生物学,E-mail:xhchen_0809@163.com
山西省基础研究计划(202103021223246,202403021221165);山西省研究生科研创新项目(2024KY467)
College of Life Sciences, Shanxi Normal University, Taiyuan 030031
Foundation projects: Fundamental Research Programs of Shanxi Province (202103021223246, 202403021221165);Postgraduate Research & Innovation Program of Shanxi Province(2024KY467)
肽酶M24蛋白(M24,Metallopeptidase 24)是一类含有“皮塔面包”保守结构域的蛋白,广泛存在于动物、植物及微生物中,在个体发育、器官建成及逆境胁迫应答等方面发挥重要作用。本研究对水稻肽酶M24家族成员进行鉴定和生物信息学分析,并利用qRT-PCR手段探究其对盐碱胁迫的响应。结果表明,在水稻全基因组中共鉴定出16个OsM24成员,不均匀地分布在12条染色体中的9条上,OsM24成员之间在氨基酸数目、蛋白稳定性及疏水性等基本理化性质方面差异显著。系统进化分析发现OsM24家族分为OsM24I、OsM24II和OsM24III三个亚族,同一亚族成员的基因结构、保守基序和结构域相对保守。GO和相互作用蛋白分析推测OsM24家族成员依赖其水解活性在蛋白质合成、加工和修饰等方面发挥作用。顺式作用元件分析表明OsM24家族基因的启动子区存在多种植物激素、非生物胁迫及生长发育相关响应元件。表达模式分析表明OsM24家族成员在水稻不同组织中具有显著的表达特异性。qRT-PCR结果表明除OsM24-7、OsM24-12、OsM24-15 和OsM24-16外,其余12个OsM24基因均能够响应盐碱胁迫,但在盐胁迫和碱胁迫下表达模式存在差异,这暗示OsM24可能通过不同调控途径应答盐碱胁迫。本研究为进一步理解肽酶M24蛋白在水稻生长发育和响应盐碱胁迫的功能提供理论参考。
Metallopeptidase 24 (M24) is a type of protein, which shares a common structural-fold, the ‘pita bread’ conserved domain widely exists in animals, plants and microorganisms and plays an important role in individual development and organ sculpting as well as the environmental stress response.In this study, in order to systematically study the characteristics of OsM24 family members in rice, the bioinformatics analysis and the qRT-PCR methods were carried out. The results showed that 16 OsM24 members were identified from rice genome and found to be unevenly distributed on 9 of 12 rice chromosomes.There were significant differences among OsM24 family members in terms of basic physicochemical properties such as the number of amino acids, protein stability and hydrophobicity etc.Their phylogenetic relationship suggested that OsM24 family members could be classified into 3 subfamilies OsM24I, OsM24II and OsM24III and members within the same subfamily exhibited conserved gene structure and motif compositions.GO ontology (GO) and predicted protein-protein interaction networks (PPI) analysis suggested that OsM24 family members exerted their functions in protein synthesis, processing, and modification by relying on their hydrolase activity. Cis-acting elements analysis indicated that there were a number of diverse regulatory elements related to hormones, stress, light and plant growth and development in the promoter region of OsM24 family member genes. The expression patterns analysis showed the expression of OsM24 genes in rice was significantly tissue-specific.The qRT-PCR analysis suggested apart from OsM24-7, OsM24-12, OsM24-15 and OsM24-16, the remaining 12 OsM24 genes all are involved in salt and alkaline stress. However, their expression patterns differed under salt stress and alkali stress conditions.These suggests that the OsM24 proteins may respond to salt and alkali stress through different regulatory pathways.Collectively, this study provides an important theoretical reference for further research on the role of M24 in rice development and saline-alkali stress response.
彭鹏,张晓林,孙佳娟,等.水稻肽酶
