1.河北农业大学农学院/华北作物改良与调控国家重点实验室/华北作物种质资源研究与利用教育部重点实验室,保定 071001;2.河北科技师范学院农学与生物科技学院,秦皇岛 066000
研究方向为大豆分子生物学,E-mail: cjh19930528@126.com
李喜焕,研究方向为大豆遗传育种与分子生物学,E-mail: lixihuan@hebau.edu.cn
张彩英,研究方向为大豆遗传育种与分子生物学,E-mail: zhangcaiying@hebau.edu.cn
国家重点研发计划项目(2023YFD2301500)
1.College of Agronomy, Hebei Agricultural University/State Key Laboratory of North China Crop Improvement and Regulation/North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Baoding 071001;2.College of Agronomy and Biotechnology, Hebei Normal University of Science & Technology, Qinhuangdao 066000
Foundation project: National Key R&D Program of China (2023YFD2301500)
生育期性状对大豆产量、品质形成以及品种生态适应性具有重要影响,发掘控制大豆生育期性状的遗传位点与候选基因,对全面解析其遗传基础以及分子改良具有重要意义。鉴于此,利用300份品种资源,在两种环境下鉴定其10个生育期性状,结合重测序获得的538.13万个SNP标记,进行全基因组关联分析。结果表明,供试品种资源的生育期性状(R1~R8、RP和R/V)存在丰富遗传变异,变异系数分布在7.3%~36.0%,以生育期结构R/V的变异系数最大。同时还发现,10个生育期性状间存在显著或极显著相关,可能存在一因多效遗传位点;有2070个SNPs至少在两种环境条件下被检测到或至少与两个性状同时关联,属于环境稳定型SNPs或一因多效SNPs。上述分子标记分别位于大豆18条染色体(除5号和12号染色体外)上,其中10号染色体检测到的关联SNPs数量最多(62.8%),其次是6号和9号染色体;并且发掘出16号染色体的Gm16: 27911126~Gm16: 29624572(9个性状,R1~R8和R/V)、10号染色体Gm10: 44591107~Gm10: 46521535(7个性状,R3~R8和RP)、9号染色体Gm09: 40595870~Gm09: 40691399(6个性状,R1、R2和R4~R7)和15号染色体Gm15: 4961358~Gm15: 6102837(6个性状,R1~R6)等一因多效位点。另外,在关联位点附近筛选到E2及新发现的Glyma.10G218100等生育期性状基因,为大豆生育期性状遗传改良提供了新位点与基因资源。
The growth period traits are essential for the formation of soybean yield and seed-quality, as well as for the ecological adaptability of soybean varieties. Thus, the mining of genetic loci and candidate genes for growth period traits is important to dissect its genetic basis and molecular improvement in soybean. In view of this, 300 soybean accessions were used to analyze ten growth period traits under two environments. Furthermore, the genome-wide association study (GWAS) was conducted by combining with 5.38 millions of SNPs of these accessions. The results showed that there existed abundant genetic variations of these ten growth period traits (R1 to R8, RP and R/V) in the accessions, with the coefficients of variations (CV) ranged from 7.3% to 36.0%, and the largest CV appeared in R/V. Meanwhile, the results also showed that there existed significant or extremely significant correlations among these growth period traits, which implying the existences of pleiotropic genetic loci. Moreover, a total of 2070 stable and pleiotropic associated SNPs were detected with at least two traits or under at least two environments. These SNPs located on 18 chromosomes (except chromosome 5 and chromosome 12), with the largest number of associated SNPs (62.8%) detected on chromosome 10, followed by chromosome 6 and chromosome 9. Furthermore, the pleiotropic genetic loci for the growth period traits were discovered, including Gm16: 27911126-Gm16: 29624572 on chromosome 16 (nine traits, R1 to R8 and R/V), Gm10: 44591107-Gm10: 46521535 on chromosome 10 (seven traits, R3 to R8 and RP), Gm09: 40595870-Gm09: 40691399 on chromosome 9 (six traits, R1, R2 and R4 to R7), and Gm15: 4961358-Gm15: 6102837 on chromosome 15 (six traits, R1 to R6), etc. Additionally, the candidate genes were screened out in the associated loci, including the known functional gene E2 and the newly discovered candidate gene Glyma.10G218100. The results provide novel genetic loci and candidate gene resources for growth period traits improvements in soybean breeding.
褚佳豪,邵振启,李文龙,等.大豆品种资源生育期性状鉴定与关联位点发掘[J].植物遗传资源学报,2025,26(12):2425-2436.
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