1榆林大学现代农学院/榆林市杂粮作物生物育种重点实验室, 陕西榆林 719000;2中国农业科学院农业资源与农业区划研究所, 北京 100081;3黄淮学院生物与食品工程学院,河南驻马店 463000;4榆林市马铃薯产业发展中心,陕西榆林 719000
研究方向为杂粮作物种质资源利用,E-mail: 19560969186@163.com
严加坤,研究方向为杂粮作物种质资源利用,E-mail: himingse@163.com
国家自然科学基金项目(32460540,32301315);陕西省创新能力支撑计划(2024CX-GXPT-03,2024-CXY-093);河南省科技攻关项目(252102110159);河南省现代农业产业体系建设专项(HARS-22-04-Z2)
1College of Advanced Agricultural Sciences, Yulin University/Key Laboratory of Minor Cereal Crop Bio-breeding of Yulin City,Yulin 719000, Shaanxi;2Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081;3School of Biological and Food Processing Engineering, Huanghuai University, Zhumadian 463000, Henan;4Yulin Potato Industry Development Center, Yulin 719000, Shaanxi
Foundation projects: National Natural Science Foundation of China (32460540, 32301315); Shaanxi Provincial Innovation Capability Support Program (2024CX-GXPT-03, 2024-CXY-093); Henan Provincial Key Scientific and Technological Research Project (252102110159); Special Fund for Modern Agricultural Industrial System Construction of Henan Province (HARS-22-04-Z2)
HD-ZIP转录因子广泛分布于植物中,是一类在植物生长发育调控及非生物胁迫响应过程中发挥关键作用的蛋白家族,但是目前针对谷子中该基因家族的系统鉴定及其成员功能的研究仍较为有限。本研究以前期实验室通过多组学联合分析筛选出的谷子抗旱候选基因Seita.1G253700.1为研究对象,利用公开的豫谷1号谷子基因组数据库,结合生物信息学分析对谷子HD-ZIP基因家族进行系统性鉴定,并分析其理化性质、系统发育、保守基序、基因结构、染色体定位及顺式作用元件。结果表明,谷子中HD-ZIP基因家族共鉴定出29个家族成员,其中氨基酸长度在220~422 aa之间,相对分子质量在23.99 kDa~44.41 kDa之间,理论等电点在4.60~9.63之间,亚细胞定位预测均定位于细胞核。根据系统发育树,谷子HD-ZIP家族成员分布在HD-ZIP Ⅰ和HD-ZIP Ⅱ亚家族,HD-ZIP Ⅲ和HD-ZIP Ⅳ亚家族无该家族成员分布,而且各亚家族成员的基序类型与基因结构差异显著;29个基因分布于7条染色体上,其中9号染色体基因数量最多,且基因数目与染色体的长度不成比例关系。顺式作用元件分析表明HD-ZIP基因家族含有脱落酸响应元件和干旱诱导MYB结合位点等多种非生物胁迫响应元件;将SiHD05基因转到拟南芥后,通过表型与生理指标综合分析发现,过表达SiHD05的拟南芥在干旱胁迫下叶片萎蔫程度加剧,超氧阴离子和脱落酸含量显著升高,验证该基因对拟南芥抗旱性具有负调控作用。本研究为探索谷子同源异型域-亮氨酸拉链蛋白SiHD05的机理与提高作物抗逆性的研究提供了参考。
Homeodomain-leucine zipper (HD-ZIP) transcription factors are widely distributed in plants and play crucial roles in regulating plant growth, development, and responses to abiotic stresses. However, systematic identification and functional characterization of this gene family in foxtail millet (Setaria italica L.) remain unclear. In our previous study, we identified the drought-resistant candidate gene Seita.1G253700.1. With the publicly available genome database of foxtail millet variety Yugu 1 combining with bioinformatics analysis, a systematic identification of the HD-ZIP gene family in foxtail millet is conducted, and its physicochemical properties, phylogenetic relationships, conserved motifs, gene structure, chromosomal location and cis-acting elements are analyzed. The results showed that a total of 29 HD-ZIP family members were identified in foxtail millet, with amino acid lengths ranging from 220 to 422 aa, relative molecular weights ranging from 23.99 kDa to 44.41 kDa, and theoretical isoelectric points from 4.60 to 9.63. All members were predicted to be localized in the nucleus by subcellular localization analysis. According to the phylogenetic tree, the HD-ZIP family members of foxtail millet were distributed in the HD-ZIP Ⅰ and HD-ZIP Ⅱ subfamilies, while no members were found in the HD-ZIP Ⅲ and HD-ZIP Ⅳ subfamilies, and significant differences in motif types and gene structures were observed among members of different subfamilies. The 29 genes were distributed on 7 chromosomes, with chromosome 9 having the largest number of genes, and the number of genes was not proportional to chromosome length. cis-acting element analysis revealed that the HD-ZIP gene family contains multiple abiotic stress-responsive elements, including abscisic acid-responsive elements and drought-inducible MYB binding sites. After transferring the SiHD05 gene into Arabidopsis thaliana, comprehensive analysis of phenotypes and physiological indices showed that overexpression of SiHD05 exacerbated leaf wilting under drought stress and significantly increased the accumulation of superoxide anion and abscisic acid, confirming that this gene negatively regulates drought resistance in Arabidopsis. This study provides a basic data for exploring the mechanism of the homeodomain-leucine zipper SiHD05 in foxtail millet and for research aimed at improving crop stress resistance.
侯昌晔,侯绪妍,唐帆,等.谷子
