1.上海市农业科学院;2.上海星辉蔬菜有限公司
“十四五”国家重点研发计划(2023YFD1201501);上海市农业科学院卓越团队建设项目[农科卓2022(007)];上海市科委重点攻关项目(2022DX1900100)
National Key R&D Program pf China (2023YFD1201501);The Outstanding Team Construction Project of Shanghai Academy of Agricultural Sciences[NKZ2022(007)];Key Tackling Project of Shanghai Municipal Science and Technology Commission [2022DX1900100]
NAC转录因子是植物中最大的基因家族之一,在植物生长发育及胁迫响应中发挥重要作用。本研究对甘蓝NAC转录因子家族进行系统鉴定,并解析其成员不同组织和高温胁迫下的表达特征,为深入探讨该基因家族在甘蓝逆境胁迫下的功能提供理论依据。利用HMMER软件筛选甘蓝NAC蛋白,并使用InterPro和NCBI-CD Search在线网站进行验证。通过使用ProtParam、TBtools、MEME、MEGA等工具,对甘蓝NAC基因家族成员的理化性质、染色体分布、基因结构、系统发育关系进行分析。结合转录组测序数据和实时荧光定量PCR技术,检测甘蓝NAC基因在不同组织器官和高温处理下的表达模式。利用本氏烟草叶片瞬时表达系统分析BoNAC36蛋白的亚细胞定位。从甘蓝基因组中鉴定到204个BoNAC基因,氨基酸长度在154-855aa之间,分子量为17.75-95.18kD,等电点介于4.33-9.83之间。204个BoNAC基因在9条染色体上呈不均匀分布,其中以5号染色体上的基因数目最多。依据拟南芥NAC基因分组方法,BoNAC基因被分为16个亚组,同一亚组内成员的保守基序和基因结构具有相似性。BoNAC基因启动子区域包含多个光响应、激素应答、逆境胁迫及生长发育调控元件。组织表达分析发现,在根中的表达水平较高的基因属于TIP和ATAF亚族。BoNAC36、BoNAC41、BoNAC69和BoNAC111基因在高温胁迫处理下显著高表达。亚细胞定位结果显示BoNAC36定位于细胞核。本研究为后续深入解析甘蓝BoNAC基因功能提供重要的数据支撑。
NAC transcription factor is one of the largest gene families in plants, playing a critical role in plant growth, development and stress response. The NAC transcription factor family in cabbage was systematically identified and the expression features of its members in various tissues and organs, and under high temperature stress were analyzed, thus providing a theoretical basis for further exploring the function of this gene family under stress condition in cabbage. NAC proteins in cabbage were screened using HMMER software and validated by the InterPro and NCBI-CD Search online websites. The physicochemical properties, chromosome distribution, gene structure, and phylogenetic relationships of NAC gene family members in cabbage were analyzed by using tools such as ProtParam, TBtools, MEME and MEGA. Meanwhile, the expression patterns of cabbage NAC genes under different tissues and high temperature stress were examined based on transcriptomic data and quantitative real-time PCR. The subcellular localization of the BoNAC36 protein was analyzed using a transient expression system in Nicotiana benthamiana leaves. The 204 BoNAC genes were identified from the cabbage genome. The amino acid lengths ranged from 154 to 855 amino acids, with molecular weights ranging from 17.75 to 95.18kD, and isoelectric points between 4.33 and 9.83. The 204 BoNAC genes were unevenly distributed across nine chromosomes, with the highest number of genes located on chromosome 5. Bsaed on the the Arabidopsis NAC gene grouping method, BoNAC genes were divided into 16 subgroups, with members within the same subgroup exhibiting similarities in both conserved motifs and gene structures. The promoter regions of BoNAC genes contained multiple cis-acting elements related to light response, hormone response, stress response, and growth regulation. Tissue-specific expression analysis showed that genes highly expressed in roots belonged to the TIP and ATAF subgroups. The BoNAC36, BoNAC41, BoNAC69 and BoNAC111 genes were significantly expressed under high temperature stress treatment. Subcellular localization results indicated that BoNAC36 was localized in the nucleus. This study provides important data support for the in-depth analysis of the function of BoNAC genes in cabbage.
