玉米CCT基因家族的鉴定与生物信息学分析
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1中国农业科学院作物科学研究所,北京 100081;2东北农业大学农学院,哈尔滨 150030;3河北北方学院农林科技学院, 张家口 075000;4北京化工大学生命科学与技术学院,北京100029

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国家重点研发计划(2018YFD0300504)


Identification and Bioinformatic Analysis of Maize CCT Gene Family
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1 Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081;2 College of Agronomy, Northeast Agricultural University, Harbin 150030;3 College of Agriculture and Forestry Science and Technology, Hebei North University, Zhangjiakou 075000;4 College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029

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National Key Research and Development Plan(2018YFD0300504)

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    摘要:

    CCT(CO、COL、和 TOC1)家族基因广泛参与植物花期的调控过程, 对植物的生长与发育起着至关重要的作用。本研究以玉米为材料,共鉴定出 57 个 CCT 基因,命名为 ZmCCT ,利用生物信息学方法开展玉米 ZmCCTs 基因的结构、氨基酸特点、染色体定位及基因进化分析,还与其他物种的 CCT 基因家族进行对比分析。结果表明,CCT 基因家族在染色体上呈现不均匀分布,其中 5 号染色体分布最多(11 个)3、7、10 等染色体分布最少(均只有 3 个)。CCT 基因家族具有相对保守的结构,即每个基因都包含保守的 CCT DNA 结构,其他少数基因含有其他 DNA 结构,CCT 蛋白的 3D 结构含有 1 个α螺旋与 3 个?折叠。根据多物种 CCT 蛋白的进化树分析根据相似性将其分为 8 个分支,分析结果显示单子叶植物玉米与谷子、二穗短柄草 CCT 基因保守性更强、亲缘关系更近。本研究为进一步揭示玉米 CCT 基因家族的功能机制提供了相应的参考。

    Abstract:

    The CCT (CO, COL, and TOC1) family genes are widely involved in the regulation of florescence, and play an important role in plant growth and development. In this study, 57 maize CCT genes, designated ZmCCT, were identified by search for sequence homolog in publicly available databases. The structure, amino acid characteristics, chromosome location and gene evolution of ZmCCT genes were analyzed by bioinformatics approaches, and the CCT gene families of other species were compared and analyzed. The ZmCCT family members were found to be unevenly distributed on chromosomes. For instance, 11 ZmCCT members were found on chromosome 5, while only three were found on chromosomes 3, 7 and 10. The ZmCCT gene family has relatively conserved structures, comprising of commonly-present CCT DNA domain, one α-helix and three β-folds, as well as DNA motifs that are only found a few of genes. The phylogenetic analysis of CCT proteins suggested nine phylogenetic branches, and the ZmCCT genes was grouped with these of Setaria italica and Brachypodium distachyon. Thus, this study provided a reference for further revealing the functional mechanism of CCT family genes in maize.

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郭栋,杜媚,周宝元,等.玉米CCT基因家族的鉴定与生物信息学分析[J].植物遗传资源学报,2019,20(4):1001-1010.

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  • 收稿日期:2018-11-07
  • 最后修改日期:2019-05-27
  • 录用日期:2019-01-31
  • 在线发布日期: 2019-07-16
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