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首页 > 过刊浏览>2020年第21卷第1期 >83-93. DOI:10.13430/j.cnki.jpgr.20190514001 优先出版
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甘蓝型矮杆直立株型油菜株高性状基因的初步定位
DOI:
10.13430/j.cnki.jpgr.20190514001
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作者:
  • 李盼 1

    李盼

    贵州师范大学生命科学学院
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  • 李超 2

    李超

    贵州省贵阳市花溪区贵州省农业科学院油菜研究所
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  • 张显强 3

    张显强

    贵州警察学院
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  • 张瑞茂 4

    张瑞茂

    贵州省农业科学院油菜研究所
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  • 罗京 1

    罗京

    贵州师范大学生命科学学院
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作者单位:

1.贵州师范大学生命科学学院;2.贵州省贵阳市花溪区贵州省农业科学院油菜研究所;3.贵州警察学院;4.贵州省农业科学院油菜研究所

作者简介:

通讯作者:

中图分类号:

基金项目:

贵州省科学技术基金重点项目(黔科合基础[2017]1415);贵州省优秀青年科技人才项目(黔科合平台人才[2017]5642);贵州省支撑计划重点项目(黔科合支撑[2017]2568号);贵州省人才基地(RCJD2018-14);贵州植物保育技术应用省级工程研究中心


Low-resolution Mapping of a Qualitative Trait Controlling Plant Height in Brassica napus L
Author:
  • LI Pan 1

    LI Pan

    College of Life Sciences,Guizhou Normal University
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  • LI Chao 2

    LI Chao


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  • ZHANG Xian-qiang 3

    ZHANG Xian-qiang


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  • ZHANG Rui-mao 4

    ZHANG Rui-mao

    Institute of Rape Research,Guizhou Academy of Agricultural Sciences
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  • LUO Jing 1

    LUO Jing

    College of Life Sciences,Guizhou Normal University
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Affiliation:

1.College of Life Sciences,Guizhou Normal University;2.Institute of Rape Research,Guizhou Academy of Agricultural Sciences

Fund Project:

Guizhou Science and Technology Foundation Key Project (Guizhou Science and Technology Foundation [2017] 1415), Guizhou Excellent Youth Science and Technology Talents Project (Guizhou Science and Technology Cooperation Platform Talents [2017] 5642),Guizhou Provincial Support Plan Key Project (Guizhou Science and Technology Cooperation Support [2017] 2568),Guizhou Talent Base (RCJD2018-14), Guizhou Provincial Engineering Research Center for Plant Conservation Technology Application

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    摘要:

    定位甘蓝型矮秆直立株型油菜的株高基因,解析矮秆性状的遗传规律,对油菜育种的产量具有重要意义。通过甘蓝型三系油菜(不育系5824×恢复系5771R)杂交,在后代F1中发现变异单株,命名“DW871”。经多代自交,从群体中选取纯合矮秆和对应纯合高秆杂交,从杂交后代分离群体中分别选取47 个矮秆、47 个高秆和10 个纯合矮秆材料,分别构建基因池。利用BSA-seq简化基因组测序技术,以47 个矮秆与47 个高秆,10 个纯合矮秆与47 个高秆进行关联分析(BSA),从47 个矮秆与47 个高秆基因混合池间共检测到差异SNP共有121998 个,非同义突变SNP共1582 个,在ChrA10染色体上定位1个显著关联区域,区间长度6.39 Mb,含1405 个候选基因;从10 个纯合矮秆与47 个高秆基因混合池间共获得1752011 个SNP,非同义突变SNP共27723个,InDel 518420个,在ChrA03、ChrA04、ChrA06、ChrA07、ChrA10和ChrC03上定位共19 个与性状相关的候选区域,区间长度5.35 Mb,含1143个候选基因。然而由于未达到理论阈值,这个区域很可能是假阳性区域,需要进一步验证。47个矮秆基因混池和10个纯矮秆这2个基因混池在ChrA10染色体上定位的关联区域互相重合,重合区间为1.83 Mb。本研究在ChrA10染色体上定位1个与DW871株高性状显著关联区间,这一研究结果为精细定位甘蓝型矮秆直立株型油菜株高性状基因奠定良好基础。

    关键词:甘蓝型矮杆油菜;株高基因;BSA-seq技术
    Abstract:

    Genetic identification of the functional genes causing the erect dwarf-type are of great significance in academic study and rapeseed breeding. We previously identified a naturally-occurred dwarf mutant (named DW871) from a single F1 plant by crosses of sterile line 5824 × recovery line 5771R. By making crosses between the homozygous mutant with a homozygous wild-type line, 47 dwarf rods (DR), 47 high rods (HR) and 10 homozygous dwarf rod lines (HDR) were identified for a genetic mapping study. Three bulks were subjected for simplified genome sequencing technology (BSA-seq), in order to achieve the preliminary mapping of the underlying functional genes. A total of 121998 SNPs were detected between 47 dwarves and 47 high-stem mixed gene pools. 1582 SNPs resulting in non-synonymous mutations were located on ChrA10 chromosome, Interval length is 6.39 MB, including 1405 candidate genes . Out of 1752011 SNPs that were obtained between HR and HDR pools 27723 SNPs led to the non-synonymous mutations. A total of 19 candidate loci were mapped on ChrA03, ChrA04, ChrA06, ChrA07, ChrA10 and ChrC03, Interval length is 5.35 Mb ,including 1143 candidate genes. However, these locus showed un-significant associations and need to be further verified. Interestingly, the association region on the ChrA10 chromosome was revealed by cases and a coincidence interval of 1.83 Mb was suggested. As a summary, the qualitative locus controlling the plant height in DW871 was mapped on ChrA10 chromosome, and this result laid a good foundation for the future fine mapping of the functional gene in Brassica napus L.

    Key words:Brassica napus L; plant height gene; BSA-seq technology
    参考文献
    贺亚军,吴道明,傅鹰,钱伟.利用DH和IF<sup>_</sup>2群体检测甘蓝型油菜株高相关性状QTL.作物学报,2018,44(04):533-541.
    He Y J, Wu D M, Fu Y, Qian W.Detection of QTLs for Plant Height Related Traits in Brassica napus L. Using DH and IF_2 Populations.Acta Agronomica Sinica,2018,44(04):533-541.
    郑本川,崔成,张锦芳,李浩杰,柴靓,蒋俊,蒋梁材.甘蓝型油菜育种亲本单株产量与农艺性状相关性分析.植物遗传资源学
    报,2019,20(01):113-121.
    Zheng B C, Cui C, Zhang J F, Li H J, Chai W, Jiang J, Jiang L C. Correlation analysis between yield and agronomic traits of Brassica napus L. breeding parents. Journal of Plant Genetic Resources, 2019, 20(01): 113-121 .
    张书芬,马朝芝,傅廷栋,钱伟.甘蓝型油菜主要农艺和产量性状的杂种优势及其分离世代的分析.中国油料作物学
    报,2007(02):121-125.
    Zhang S F,Ma C Z,Fu T D,Qian W.The Heterosis of Main Agronomic and Yield Traits of Brassica napus L. and Analysis of Its Separation Generation.Chinese Journal of Oil Crop Sciences,2007(02):121-125.
    范成明,田建华,胡赞民,王珏,吕慧颖,葛毅强,魏珣,邓向东,张蕾颖,杨维才.油菜育种行业创新动态与发展趋势.植物遗
    传资源学报,2018,19(03):447-454.
    Fan C M, Tian J H, Hu Z M, Wang W, Lü H Y.Ge Y Q, Wei X, Deng X D, ZhangL Y, Yang W C.
    Innovation Trends and Development Trends of Rape Breeding Industry. Journal of Plant Genetic Resources, 2018, 19(03): 447-454.
    梁翰文,吕慧颖,葛毅强,魏珣,邓向东,杨维才,田志喜.作物育种关键技术发展态势.植物遗传资源学 报,2018,19(03):390-398.
    Liang H W, Lü H Y, Ge Y Q, Wei W, Deng X D, Yang W C, Tian Z X.Development Trends of Key Technologies in Crop Breeding. Journal of Plant Genetic Resources, 2018, 19(03): 390-398.
    [6] 唐丁,吕慧颖,王珏,葛毅强,魏珣,杨维才,程祝宽.作物基因组学研究进展.植物遗传资源学报,2018,19(03):383-389.
    Tang D, Lu H Y, Wang W, Ge Y Q, Wei W, Yang W C, Cheng Z K.Progress in Crop Genomics Research.Journal of Plant Genetic Resources,2018,19(03):383-389.
    [7] Lu G Y, Yang G S, Fu T D. Molecular mapping of a dominant genic male sterility gene Ms in rapeseed (Brassica napus). Plant Breeding, 2010, 123(3):262-265.
    [8] Wang M L , Zhao Y , Chen F ,Yin X C. Inheritance and potentials of a mutated dwarfing gene ndf1 in Brassica napus. Plant Breeding, 2008, 123(5):449-453.
    [9] Sun C, Wang B, Yan L, Hu K, Liu S, Zhou Y, Guan C, Zhang Z, Li J, Zhang J, Chen S, Wen J, Ma C, Tu J, Shen J, Fu T, Yi B. Genome-Wide Association Study Provides Insight into the Genetic Control of Plant Height in Rapeseed (Brassica napus L.). Frontiers in Plant Science, 2016, 7.
    [10] Liu C,Wang J,Huang T,Wang F,Yuan F,SCheng X M,ZhangY,SShi S W,SWu J S,LiuK.A missense mutation in the VHYNP motif of a DELLA protein causes a semi-dwarf mutant phenotype in Brassica napus. Theoretical and Applied Genetics, 2010, 121(2):249-258.
    [11] Zeng X , Zhu L , Chen Y , Qi L,Pu Y,Wen J,Yi B,Shen J,Ma C,Fu T. Identification, fine mapping and characterisation of a dwarf mutant (bnaC.dwf) inBrassica napus. Theoretical Applied Genetics, 2011, 122(2):421-428.
    [12] 杨朋娜,张璐,史慧娟,李清,王茂林.甘蓝型油菜矮秆突变基因ndf1的分子标记连锁遗传作图.四川大学学报(自然科版),2015,52(04):889-894.
    Yang P N,Zhang W,Shi H J,Li Q,Wang M L.Molecular marker-linked genetic mapping of dwarf mutant gene ndf1 in Brassica napus L..Journal of Sichuan University (Natural Science Edition),2015,52(04):889-894 .
    [13] 牛显飞,蒋学飞,解艳芳刘双双,王茂林.甘蓝型油菜矮化突变体的茎秆发育转录组分析.四川大学学报(自然科学
    版),2018,55(01):201-206.
    Niu X F,Jiang X F,Xie Y F,Liu S S,Wang M L.A transcriptome analysis of stem development of Brassica napus dwarf mutants.Journal of Sichuan University(Natural Science Edition), 2018,55(01):201-206.
    [14] Wang X,Wang H,Long Y,Liu L,Zhao YTian J,Zhao W,SLi B,SChen L,Chao H,Li M.Dynamic and comparative QTL analysis for plant height in different developmental stages of Brassica napusL.. Theoretical and Applied Genetics, 2015, 128(6):1175-1192.
    [15] Wang Y , Chen W , Chu P,SWan S,Yang M,SWang M, Guan RMapping a major QTL responsible for dwarf architecture in Brassica napus using a single-nucleotide polymorphism marker approach. BMC Plant Biology, 2016, 16(1):178.
    [16]赵波. 甘蓝型油菜矮秆基因定位、克隆及功能分析.华中农业大学,2017,235-301.
    Zhao B. Location, cloning and functional analysis of dwarf gene in Brassica napus L. . Huazhong Agricultural University, 2017,235-301.
    [17] Zhao B, Li H, Li J,Wang B,Dai C,Wang J,SLiu K D.Brassica napus DS-3, encoding a DELLA protein, negatively regulates stem elongation through gibberellin signaling pathway. Theoretical Applied Genetics, 2017, 130(4):727-741.
    [18] 张瑞茂,李超,陈大伦,向阳.甘蓝型油菜特异矮秆直立株型新品系DW871株高的遗传分析.中国油料作物学报,2019,41(01):1-9.
    Zhang R M,Li C,Chen D L,Xiang Y.Genetic Analysis of Plant Height of Brassica napus L. Specific Dwarf Plant Type DW871.Chinese Journal of Oil Crop Sciences,2019,41(01):1-9.
    [19] 张瑞茂,李超,陈大伦,向阳.甘蓝型油菜矮杆直立株型材料DW871的选育.种子,2019,38(02):116-120+123.
    Zhang R M,Li C,Chen D L,Xiang Y.Selection of DW871 of Brassica napus L. Straight Plant Type Material.Seed,
    2019,38(02):116-120+123.
    [20]孙海波,王智慧,刘胜毅,黄军艳,董彩华.一种适用于油菜、大豆、花生、芝麻四种油料作物种子的RNA提取方法.中国油料作物学
    报,2012,34(04):353-358.
    Sun H B, Wang Z H, Liu S Y, Huang J Y, Dong C H.An RNA extraction method for four oilseed crops of rape, soybean, peanut and sesame seeds.Chinese Journal of Oil Crop Sciences,2012,34(04):353-358.
    [21] Hill J T , Demarest B L , Bisgrove B W , Gorsi B,Su, Y C , Yost H J.MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq. Genome Research, 2013, 23(4):687-697.
    [22] Cingolani P , Platts A , Wang L L , Coon M , Nguyen T, Wang L. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff. Fly, 2012, 6(2):80-92.
    [23] Shi, T, Li R, Zhao Z, Ding G, Long Y, Meng J.QTL for Yield Traits and Their Association with Functional Genes in Response to Phosphorus Deficiency in Brassica napus. PLoS ONE, 2013, 8(1):e54559.
    [24] 唐敏强,程晓晖,童超波,刘越英,赵传纪,董彩华,于景印,马小艮,黄军艳,刘胜毅.甘蓝型油菜株高性状的全基因组关联分析.作物学报,2015,41(07):1121-1126.
    Tang M Q, cheng X H,Tong C B,LiuC Y, zhaoC J, Dong C H, Yu J Y, Ma X G, Huang J Y, Liu S Y. Genome-wide association analysis of plant height traits in brassica napus l. acta agronomica sinica,2015,41(07):1121-1126. (in Chinese with English abstract)
    [25] 姜成红,耿鑫鑫,魏文辉,姜慧芳.甘蓝型油菜株高QTL定位及主效QTL区间候选基因预测.河南农业科
    学,2017,46(08):27-31.
    Jiang C h,Yan X X,Wei W H,Jiang H F.QTL Mapping of Plant Height and Candidate Gene Prediction of Major QTL Intervals in Brassica napus L..Journal of Henan Agricultural Sciences,2017,46(08):27-31.
    [26] Basunanda P, Radoev M, Ecke W, Friedt W, Becker H C, Snowdon R J.Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napusL.). Theoretical and Applied Genetics, 2010, 120(2):271-281.
    [27] Basunanda p, Radoev W, Ecke W,Friedt H, Becker C,Snowdon J.Comparative mapping of quantitative trait loci involved in heterosis for seedling and yield traits in oilseed rape (Brassica napus L.). Theor Appl Genet.August 2010,6(2): 271-281.
    [28] 张凤启,刘越英,程晓辉,童超波,董彩华,唐敏强,黄军艳,刘胜毅.利用高密度SNP标记定位甘蓝型油菜株高QTL.中国油料作物学报,2014,36(06):695-700.
    Zhang F Q, Liu Y Y, Cheng X H, Tong C B,Tang M Q,Huang J Y,Liu S Y.Study on the Plant Height QTL of Brassica napus L. Using High Density SNP Markers.Chinese Journal of Oil Crop Sciences,2014,36(06):695-700.
    [29] Zhou Q H,Fu D H, Mason A, Zeng Y J , Zhao C X, Huang Y J.In silico integration of quantitative trait loci for seed yield and yield-related traits in Brassica napus. Molecular Breeding, 2014, 33(4):881-894.
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李盼,李超,张显强,等.甘蓝型矮杆直立株型油菜株高性状基因的初步定位[J].植物遗传资源学报,2020,21(1):83-93.

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  • 收稿日期:2019-05-14
  • 最后修改日期:2019-11-20
  • 录用日期:2019-09-02
  • 在线发布日期: 2020-01-17
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