疣粒野生稻WRKY基因家族全基因组鉴定和分析
作者:
作者单位:

1.云南农业大学植物保护学院/云南生物资源保护与利用国家重点实验室,昆明 650201;2.云南农业大学农学与生物技术学院, 昆明 650201

作者简介:

研究方向为分子植物病理学,E-mail: 2503339358@qq.com;

通讯作者:

罗 琼,研究方向为植物发育与抗病分子遗传,E-mail: qiongbf@aliyun.com

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基金项目:

国家自然科学基金(U2102219);云南省陈学伟专家工作站(202305AF150124)


Genome-wide Identification and Bioinformatics Aanalysis of WRKY Gene Family in Wild Rice Species, Oryza granulata
Author:
Affiliation:

1.College of Plant Protection, Yunnan Agricultural University/Yunnan State Key Laboratory of Biological Resources Conservation and Utilization, Kunming 650201;2.College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201

Fund Project:

Foundation projects: National Natural Science Foundation of China (U2102219);Yunnan Chen Xuewei Expert Workstation (202305AF150124)

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    摘要:

    WRKY转录因子是高等植物中成员数量较多的转录因子之一,在植物的生长发育和衰老、非生物和生物胁迫等过程中发挥着重要的作用。疣粒野生稻是栽培稻的近缘野生种,具有耐荫、耐旱和高抗白叶枯病等特性,是改良栽培稻的重要种质资源。本研究利用HMMER、Pfam 、SMART 、TBtools、NCBI软件和网站,在疣粒野生稻基因组中鉴定了94个编码WRKY转录因子的基因(OgWRKYs),不均一分布在12条染色体上,根据其所含WRKY 结构域的数量和锌指结构的特征,分为Ⅰ、Ⅱ、Ⅲ和Ⅳ组,II组成员最多(52个),与其他物种相似。除含有保守的WRKYGQK七肽序列外,还鉴定到6种变异类型,其中WRKYGHK、WRRYGQK、WRKYAKK和WRKYSQK是植物中首次报道的新变异类型。根据保守结构域分析, OgWRKY61、OgWRKY71和OgWRKY77a可能与植物抗病相关。KEGG pathway富集分析发现,有14个OgWRKY转录因子富集在植物-病原互作通路,其中10个同时富集在MAPK信号通路中。进一步结合顺式作用元件分析结果,推测OgWRKY30b、OgWRKY53、OgWRKY88、OgWRKY96OgWRKY111可能在疣粒野生稻响应生物和非生物胁迫中发挥重要作用。qRT-PCR 分析结果表明,OgWRKY30b、OgWRKY53、OgWRKY88OgWRKY111基因的表达均受白叶枯病菌PXO99诱导,而OgWRKY96表达受白叶枯病菌侵染抑制。研究结果对疣粒野生稻中优异OgWRKYs基因资源的挖掘具有重要参考价值。

    Abstract:

    WRKY transcription factor is one of the most abundant transcription factors in higher plants, and play an important role in plant growth and development, senescence, abiotic and biological stress. O. granulata Oryza meyeriana subsp. Granulata), which serves as a closely related wild species of cultivated rice, represents the characteristics of shade tolerance, drought tolerance and high resistance to bacterial blight, becoming an important germplasm resources for cultivated rice improvement. In this study, using HMMER, Pfam, SMART, TBtools, NCBI software and website, 94 genes encoding WRKY transcription factors (OgWRKYs) were identified in O. granulata, which were unevenly distributed on 12 chromosomes. According to the number of WRKY domains and the characteristics of zinc finger structure, they were divided into groups Ⅰ, Ⅱ, Ⅲ and Ⅳ. Group II had the most members (52), which was similar to other species. In addition to the conserved WRKYGQK heptaeptides, six variants were identified, among which WRKYGHK, WRRYGQK, WRKYAKK and WRKYSQK were new variants reported for the first time in plants. According to conserved domain analysis, OgWRKY61, OgWRKY71 and OgWRKY77a may be associated with plant disease resistance.KEGG pathway enrichment analysis showed that 14 OgWRKY transcription factors were enriched in plant-pathogen interaction pathways, and 10 of them were simultaneously enriched in MAPK signaling pathways. Further analysis of cis-acting elements suggested that OgWRKY30b, OgWRKY53, OgWRKY88, OgWRKY96 and OgWRKY111 might play important roles in response to biological and abiotic stresses in O. granulata. The results of qRT-PCR analysis showed that the expression of OgWRKY30b, OgWRKY53, OgWRKY88 and OgWRKY111 genes were induced by PXO99, while the expression of OgWRKY96 was inhibited by infection. The results of this study provided important reference for future mining of OgWRKYs genes in O. granulata.

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阮孙美,张攀,张敏,等.疣粒野生稻WRKY基因家族全基因组鉴定和分析[J].植物遗传资源学报,2024,25(4):629-646.

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  • 收稿日期:2023-09-04
  • 最后修改日期:2023-11-29
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  • 在线发布日期: 2024-04-29
  • 出版日期: 2024-04-16
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