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Home > Archive>Volume 25, Issue 4, 2024 >629-646. DOI:10.13430/j.cnki.jpgr.20230904001 Online First
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Genome-wide Identification and Bioinformatics Aanalysis of WRKY Gene Family in Wild Rice Species, Oryza granulata
DOI:
10.13430/j.cnki.jpgr.20230904001
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  • RUAN Sunmei 1

    RUAN Sunmei

    College of Plant Protection, Yunnan Agricultural University/Yunnan State Key Laboratory of Biological Resources Conservation and Utilization, Kunming 650201
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  • ZHANG Pan 1

    ZHANG Pan

    College of Plant Protection, Yunnan Agricultural University/Yunnan State Key Laboratory of Biological Resources Conservation and Utilization, Kunming 650201
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  • ZHANG Min 1

    ZHANG Min

    College of Plant Protection, Yunnan Agricultural University/Yunnan State Key Laboratory of Biological Resources Conservation and Utilization, Kunming 650201
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  • ZENG Qianchun 2

    ZENG Qianchun

    College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201
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  • ZHANG Hui 2

    ZHANG Hui

    College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201
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  • LUO Qiong 1

    LUO Qiong

    College of Plant Protection, Yunnan Agricultural University/Yunnan State Key Laboratory of Biological Resources Conservation and Utilization, Kunming 650201
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Affiliation:

1.College of Plant Protection, Yunnan Agricultural University/Yunnan State Key Laboratory of Biological Resources Conservation and Utilization, Kunming 650201;2.College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201

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Fund Project:

Foundation projects: National Natural Science Foundation of China (U2102219);Yunnan Chen Xuewei Expert Workstation (202305AF150124)

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    Abstract:

    WRKY transcription factor is one of the most abundant transcription factors in higher plants, and play an important role in plant growth and development, senescence, abiotic and biological stress. O. granulata (Oryza meyeriana subsp. Granulata), which serves as a closely related wild species of cultivated rice, represents the characteristics of shade tolerance, drought tolerance and high resistance to bacterial blight, becoming an important germplasm resources for cultivated rice improvement. In this study, using HMMER, Pfam, SMART, TBtools, NCBI software and website, 94 genes encoding WRKY transcription factors (OgWRKYs) were identified in O. granulata, which were unevenly distributed on 12 chromosomes. According to the number of WRKY domains and the characteristics of zinc finger structure, they were divided into groups Ⅰ, Ⅱ, Ⅲ and Ⅳ. Group II had the most members (52), which was similar to other species. In addition to the conserved WRKYGQK heptaeptides, six variants were identified, among which WRKYGHK, WRRYGQK, WRKYAKK and WRKYSQK were new variants reported for the first time in plants. According to conserved domain analysis, OgWRKY61, OgWRKY71 and OgWRKY77a may be associated with plant disease resistance.KEGG pathway enrichment analysis showed that 14 OgWRKY transcription factors were enriched in plant-pathogen interaction pathways, and 10 of them were simultaneously enriched in MAPK signaling pathways. Further analysis of cis-acting elements suggested that OgWRKY30b, OgWRKY53, OgWRKY88, OgWRKY96 and OgWRKY111 might play important roles in response to biological and abiotic stresses in O. granulata. The results of qRT-PCR analysis showed that the expression of OgWRKY30b, OgWRKY53, OgWRKY88 and OgWRKY111 genes were induced by PXO99, while the expression of OgWRKY96 was inhibited by infection. The results of this study provided important reference for future mining of OgWRKYs genes in O. granulata.

    Key words:Oryza granulata;WRKY transcription factor;OgWRKYs;genomics;KEGG analysis
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History
  • Received:September 04,2023
  • Revised:November 29,2023
  • Adopted:
  • Online: April 29,2024
  • Published: April 16,2024
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