2025-4-5- 1
Home > Archive>Volume 25, Issue 9, 2024 >1540-1551. DOI:10.13430/j.cnki.jpgr.20231227001
PDF HTML XML Export Cite reminder
Exploration of Elite Genetic Loci for Grain Nitrogen Content and Prediction of Candidate Genes in Maize
Author:
Affiliation:

1.Crop Germplasm Research Institute， Henan Academy of Agricultural Sciences， Zhengzhou 450002;2.School of Life Sciences， Henan University， Kaifeng 475001

Fund Project:

Foundation projects： National Key Research and Development Program of China（2021YFD1200703）； Henan Province Science and Technology Research Program Project（222102110471，232102111103）； Technology Innovation Team Project of Henan Academy of Agricultural Sciences （2024TD19）； Independent Innovation Project of Henan Academy of Agricultural Sciences （2023ZC009）

  • Article
    • | |
  • Metrics
    • |
  • Reference [41]
    • | | | |
  • Comments
    Abstract:

    Nitrogen content in maize grains is closely related to maize quality， and the analysis of its genetic mechanism is great significance for maize quality breeding. In this study， we used 252 maize inbred lines as an association population， and used bayesian-information and linkage-disequilibrium iteratively nested keyway （BLINK）， fixed and random model circulating probability unification （FarmCPU）， general linear model （GLM）， mixed linear model （MLM）， multiple loci mixed model （MLMM）， and settlement of MLMs under progressively exclusive relationship （SUPER） to conduct genome-wide association analysis for grain nitrogen content. A total of thirteen SNPS （P<3.64E-07） were identified. Six， three， seven， four， two and four SNPs were detected by BLINK， FarmCPU， GLM， MLM， MLMM and SUPER methods， respectively. S3_ 8879213 can be detected in five methods， S9_146173702 can be detected in four methods， S5_114774030 and S7_ 182217338 can be detected in three methods， S1_10906326， and S1_177528813 can be detected in two methods. A total of twenty-five candidate genes were identified， among which Zm00001eb275080 and Zm00001eb330700 may be the important candidate genes affecting maize grain nitrogen content.

    Reference
    [1] 戴景瑞, 鄂立柱. 百年玉米, 再铸辉煌-中国玉米产业百年回顾与展望. 农学学报, 2018,8 (1): 83-88Dai J R, E L Z. From the past centennial progress to more brilliant achievements in the future: The history and prospects of maize industrialization in china. Journal of Agriculture, 2018, 8(1): 83-88
    [2] 李少昆, 赵久然, 董树亭, 赵明, 李潮海, 崔彦宏, 刘永红, 高聚林, 薛吉全, 王立春, 王璞, 陆卫平, 王俊河, 杨祁峰, 王子明. 中国玉米栽培研究进展与展望. 中国农业科学, 2017, 50(11): 1941-1959Li S K, Zhao J R, Dong S T, Zhao M, Li C H, Cui Y H, Liu Y H, Gao J L, Xue J Q, Wang L C, Wang P, Lu W P, Wang J H, Yang Q F, Wang Z M. Advances and prospects of maize cultivation in China. Scientia Agricultura Sinica, 2017, 50(11): 1941-1959
    [3] Duvick D N. The contribution of breeding to yield advances in maize (Zea mays L.). Advances in Agronomy, 2005, 86: 83-145
    [4] Hirel B, Bertin P, Quillere′ I, Bourdoncle W, Attagnant C, Dellay C, Gouy A, Cadiou S, Retailliau C, Falque M, Gallais A. Towards a better understanding of the genetic and physiological basis for nitrogen use efficiency in maize. Plant Physiology, 2001, 125(3): 1258-1270
    [5] Gallais A, Hirel B. An approach to the genetics of nitrogen use efficiency in maize. Journal of Experimental Botany, 2004, 55(396): 295-306
    [6] Hirel B, Le Gouis J, Ney B, Gallais A. The challenge of improving nitrogen use efficiency in crop plants: Towards a more central role for genetic variability and quantitative genetics within integrated approaches. Journal of Experimental Botany, 2007, 58(9): 2369-2387
    [7] Coque M, Martin A, Veyrieras J B, Hirel B, Gallais A. Genetic variation for N-remobilization and postsilking N-uptake in a set of maize recombinant inbred lines. 3. QTL detection and coincidences. Theoretical and Applied Genetics, 2008, 117(5): 729-747
    [8] Wassom J J, Wong J C, Martinez E, King J J, DeBaene J, Hotchkiss J R, Mikkilineni V, Bohn M O, Rocheford T R. QTL associated with maize kernel oil, protein, and starch concentrations； kernel mass； and grain yield in Illinois high Oil × B73 backcross-derived lines. Crop Science, 2008, 48(1): 243-252
    [9] Zhang H D, Jin T T, Huang Y Q, Chen J T, Zhu L Y, Zhao Y F, Guo J J. Identification of quantitative trait loci underlying the protein, oil and starch contents of maize in multiple environments. Euphytica, 2015, 205:169-183
    [10] Yang Z, Li X, Zhang N, Jiang H W, Gao J, Kuai B K, Ding Y L, Huang X Q. Detection of quantitative trait loci for kernel oil and protein concentration in a B73 and Zheng58 maize cross. Genetics and Molecular Research, 2016, 15(3):1-10
    [11] 赵志鑫, 崔婷婷, 何坤辉, 兰天茹, 常立国, 刘建超．多环境下玉米籽粒品质性状的QTL定位.农业生物技术学报,2018, 26(12): 2027-2035Zhao Z X, Cui T T, He K H, Lan T R, Chang L G, Liu J C. Mapping QTL for grain quality traits in maize (Zea mays) under multi-environments. Journal of Agricultural Biotechnology, 2018, 26(12): 2027-2035
    [12] 李冉冉,张秀英,李婷,杨炳鹏,于芮苏,李冬梅,李勤,徐淑兔. 不同授粉方式下玉米籽粒品质性状的QTL定位. 西北农林科技大学学报,2021,49(11):115-124Li R R, Zhang X Y, Li T, Yang B P, Yu R S, Li D M, Li Q, Xu S T. QTL mapping of maize grain quality under different pollination methods. Journal of Northwest A&F University, 2021, 49(11):115-124
    [13] 张静, 王彩红, 赵永锋, 祝丽英, 黄亚群, 郭晋杰, 陈景堂. 玉米种质资源子粒容重和品质性状差异性分析. 植物遗传资源学报, 2016, 17(5): 832-839Zhang J, Wang C H, Zhao Y F, Zhu L Y, Huang Y Q, Guo J J, Chen J T. Difference analysis of kernel test weight and nutritional quality traits in maize (Zea mays L.) germplasm resources. Journal of Plant Genetic Resources, 2016, 17(5):832-839
    [14] 杨露. 玉米籽粒品质性状的全基因组关联分析. 郑州: 河南农业大学, 2020Yang L. Genome-wide association analysis of quality traits in maize kernels. Zhengzhou: Henan Agricultural University, 2020
    [15] 赵海军,史佳晴,王彬,郭益洋,胡小丽,韩赞平. 150 份玉米自交系籽粒及其品质性状的综合评价.河南农业科学, 2023, 52(5): 33-39Zhao H J, Shi J Q, Wang B, Guo Y Y, Hu X L, Han Z P. Comprehensive evaluation of grain and its quality traits of 150 maize inbred lines. Journal of Henan Agricultural Sciences, 2023, 52(5): 33-39
    [16] 马娟, 王利锋, 曹言勇, 李会勇. 玉米出籽率全基因组关联分析.植物遗传资源学报,2021,22 (2):448-454Ma J, Wang L F, Cao Y Y, Li H Y. Genome-wide association studies for kernel ratio in maize. Journal of Plant Genetic Resources, 2021,22(2):448-454
    [17] Jia T J, Wang L F, Li J J, Ma J, Cao Y Y, Lübberstedt T, Li H Y. Integrating a genome-wide association study with transcriptomic analysis to detect genes controlling grain drying rate in maize (Zea may L.) . Theoretical and Applied Genetics, 2020,133:623-634
    [18] Wang Y C, Xu J Y, Ge M, Ning L H, Hu M M, Zhao H. High-resolution profile of transcriptomes reveals a role of alternative splicing for modulating response to nitrogen in maize. BMC Genomics, 2020, 21(1):353
    [19] Caicedo M, Munaiz E D, Malvar R A, Jiménez J C, Ordas B. Precision mapping of a maize MAGIC population identified a candidate gene for the senescence-associated physiological traits. Frontiers in Genetics, 2021, 12:716821
    [20] Heindl K, Martinez J. Nol9 is a novel polynucleotide 5′-kinase involved in ribosomal RNA processing. The EMBO Journal, 2010, 29(24): 4161-4171
    [21] Hu S, Wang C, Sanchez D L, Lipka A E, Liu P, Yin Y, Blanco M, Lübberstedt T. Gibberellins promote brassinosteroids action and both increase heterosis for plant height in maize (Zea mays L.) . Frontiers in Plant Science, 2017, 8:1039
    [22] Nelissen H, Rymen B, Jikumaru Y, Demuynck K, Van Lijsebettens M, Kamiya Y, Inzé D, Beemster GT. A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division. Current Biology, 2012, 22(13):1183-1187
    [23] 崔荣秀, 张议文, 陈晓倩, 谷彩红, 张荃. 植物bZIP参与胁迫应答调控的最新研究进展.生物技术通报, 2019, 35(2):143-155Cui R X, Zhang Y W, Chen X Q, Gu C H, Zhang Q. The latest research progress on the stress responses of bZIP involved in plants. Biotechnology Bulletin , 2019, 35(2):143-155
    [24] Wang J C, Xu H, Zhu Y, Liu Q Q, Cai X L. OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm. Journal of Experimental Botany, 2013, 64(11):3453-3466
    [25] Basnet B, Khanal S. Quantitative trait loci and candidate genes for iron and zinc bio-fortification in genetically diverse germplasm of maize (Zea mays L.): A systematic review. Heliyon, 2022, 8(12): e12593
    [26] Wang Z Y, Gehring C, Zhu J H, Li F M, Zhu J K, Xiong L M. The Arabidopsis vacuolar sorting receptor1 is required for osmotic stress-induced abscisic acid biosynthesis. Plant Physiology, 2015, 167:137-152
    [27] Lin J W, Li S K, Liang G Y, Liu M L, Jin T C, Qu Z W, Li H G, Chen S S, Li C, Zhang A, Ruan Y Y, Cui Z H. Genetic basis of maize ear angle revealed by high-density single nucleotide polymorphism markers in four recombinant inbred line populations. Euphytica, 2020, 216: 132
    [28] 黄幸, 丁峰, 彭宏祥, 潘介春, 何新华, 徐炯志, 李琳. 植物WRKY转录因子家族研究进展. 生物技术通报, 2019, 35(12):129-143Huang X, Ding F, Peng H X, Pan J C, He X H, Xu J Z, Li L. Research progress on family of plant WRKY transcription factors. Biotechnology Bulletin 2019, 35(12):129-143
    [29] Xiong W D, Wang Y J, Guo Y Z, Tang W, Zhao Y R, Yang G F, Pei Y H, Chen J T, Song X Y, Sun J. Transcriptional and metabolic responses of maize shoots to long-term potassium deficiency. Frontiers in Plant Science, 2022, 13:922581
    [30] Zeng R, Li Z Y, Shi Y T, Fu D Y, Yin P, Cheng J K, Jiang C F, Yang S H. Natural variation in a type-A response regulator confers maize chilling tolerance. Nature Communications, 2021, 12(1):4713
    [31] Jia Z T, Giehl R F H, Hartmann A, Estevez J M, Bennett M J, von Wirén N. A spatially concerted epidermal auxin signaling framework steers the root hair foraging response under low nitrogen. Current Biology, 2023, 33(18):3926-3941
    [32] Wang S, Guo T, Wang Z, Kang J, Yang Q, Shen Y, Long R. Expression of three related to ABI3/VP1 genes in Medicago truncatula caused increased stress resistance and branch increase in Arabidopsis thaliana. Frontiers in Plant Science, 2020, 11:611
    [33] Brühl J, Trautwein J, Sch?fer A, Linne U, Bouazoune K. The DNA repair protein SHPRH is a nucleosome-stimulated ATPase and a nucleosome-E3 ubiquitin ligase. Epigenetics Chromatin, 2019, 12(1):52
    [34] Xu C, Luo F, Hochholdinger F. LOB domain proteins: Beyond lateral organ boundaries. Trends in Plant Science, 2016, 21(2):159-167
    [35] Du X M, Fang T, Liu Y, Wang M, Zang M S, Huang L Y, Zhen S H, Zhang J, Shi Z C, Wang G Y, Fu J J, Liu Y J. Global profiling of N6- methyladenosine methylation in maize callus induction. The Plant Genome, 2020, 13(2): e20018
    [36] Shuai B, Reynaga-Pe?a C G, Springer P S. The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiology, 2002, 129(2):747-761
    [37] Xu C Z, Tai H H, Saleem M, Ludwig Y, Majer C, Berendzen K W, Nagel K A, Wojciechowski T, Meeley R B, Taramino G, Hochholdinger F. Cooperative action of the paralogous maize lateral organ boundaries (LOB) domain proteins RTCS and RTCL in shoot-borne root formation. New Phytologist, 2015, 207(4):1123-1133
    [38] Taramino G, Sauer M, Stauffer J L, Multani D, Niu X, Sakai H, Hochholdinger F. The maize (Zea mays L.) RTCS gene encodes a LOB domain protein that is a key regulator of embryonic seminal and post-embryonic shoot-borne root initiation. The Plant Journal, 2007, 50(4): 649-659
    [39] Jiang X, Cui H T, Wang Z, Kang J M, Yang Q C, Guo C H. Genome-wide analysis of the LATERAL ORGAN BOUNDARIES Domain (LBD) members in alfalfa and the involvement of MsLBD48 in nitrogen assimilation. International Journal of Molecular Science, 2023, 24(5):4644
    [40] Chen Q Y, Liu Z P, Wang B B, Wang X F, Lai J S, Tian F. Transcriptome sequencing reveals the roles of transcription factors in modulating genotype by nitrogen interaction in maize. Plant Cell Reports, 2015, 34(10):1761-1771
    [41] Yu C, Chen H M, Tian F, Bi Y M, Rothstein J S, Leach E J, He C Y. Identification of differentially-expressed genes of rice in overlapping responses to bacterial infection by Xanthomonas oryzae pv. oryzae and nitrogen deficiency. Journal of Integrative Agriculture, 2015, 14(5): 888-899
    Related
    Cited by
    Comments
    Comments
    分享到微博
    Submit
Get Citation

Copy
Share
Article Metrics
  • Abstract:136
  • PDF: 1345
  • HTML: 16
  • Cited by: 0
History
  • Received:December 27,2023
  • Online: September 02,2024
Article QR Code
You are the 604732th visitor 京ICP备09069690号-23
® 2025 All Rights Reserved
Supported by:Beijing E-Tiller Technology Development Co., Ltd.
Firefox, Chrome, IE10, IE11 are recommended. Other browsers are not recommended.