The Genetic Analysis of Kernel-Related Traits and Fine Mapping of a Major QTL qKW2.04 in Maize
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1.Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/State Key Lab of Crop Gene Resource and Breeding, Beijing 100081;2.Hunan Crop Research Institute, Changsha 410125

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Foundation projects: National Key R&D Program of China (2021YFD1200705, 2020YFE0202300);Fundamental Research Funds for Central Non-Profit of Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (Y2020YJ09, CAAS-ZDRW202109);Innovation Program of CAAS

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    Abstract:

    Kernel-related traits, including kernel length, kernel width, and hundred kernel weight, are pivotal factors in determining maize yield. In this study, a recombinant inbred line (RIL) population derived from the maize inbred lines B73 and CML277 was utilized as the experimental material. Based on the high-precision genetic maps constructed through genotyping-by-sequencing (GBS) technology, nine kernel-related quantitative trait loci (QTL) were identified. The major locus qKW2.04 was precisely located on chromosome 2 using the inclusive composite interval mapping (ICIM) method, explaining 20.34% and 15.84% of the phenotypic variation on grain width and 100-grain weight, respectively. In addition, an F2 segregating population was developed using the recurrent parent B73 and its introgression line (NIL-1041A) to further delimit qKW2.04. This locus was found with contribution due to two tightly linked kernel width major QTL, designated as qKW2.04-1 and qKW2.04-2, which were located in the marker intervals InDel23.32~umc1555 and InDel47.09~InDel57.06, explaining 22.45% and 12.22% of the phenotypic variation, respectively. The favorable allelic variations for both QTLs were contributed by CML277. Through the selection of recombinant individuals within the target region, qKW2.04-1 was finely positioned between molecular markers InDel26.76~InDel27.86 within a 1.1 Mb interval. This study provides new clues for elucidating the genetic basis of kernel-related traits and gene resources for high-yield molecular breeding in maize.

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History
  • Received:February 23,2024
  • Revised:
  • Adopted:
  • Online: November 07,2024
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